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5ae732de

Commit 5ae732de authored 9 months ago by SAIDI SOMIA Committed by Johann Confais 9 months ago

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README.md 28 additions, 22 deletions

README.md
Snakefile 30 additions, 27 deletions

Snakefile
config/example.yaml 2 additions, 5 deletions

config/example.yaml
containers/te_finder_2.31.sif 0 additions, 0 deletions

containers/te_finder_2.31.sif
envs/bedtools.yaml 6 additions, 0 deletions

envs/bedtools.yaml
envs/biopython.yaml 7 additions, 0 deletions

envs/biopython.yaml
envs/minimap2.yaml 8 additions, 0 deletions

envs/minimap2.yaml
envs/networkX.yaml 3 additions, 3 deletions

envs/networkX.yaml
envs/snakemake_env.yaml 0 additions, 14 deletions

envs/snakemake_env.yaml
executables/matcherThreads2.32 0 additions, 0 deletions

executables/matcherThreads2.32
run_Snakemake.sh 1 addition, 1 deletion

run_Snakemake.sh
scripts/bestHits.py 1 addition, 2 deletions

scripts/bestHits.py
scripts/cliques.py 6 additions, 7 deletions

scripts/cliques.py
scripts/reformat.py 3 additions, 2 deletions

scripts/reformat.py
scripts/seqIdLenFasta.py 0 additions, 1 deletion

scripts/seqIdLenFasta.py
scripts/stats.py 19 additions, 68 deletions

scripts/stats.py
scripts/uniqueCopies.py 0 additions, 6 deletions

scripts/uniqueCopies.py

with 114 additions and 158 deletions

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