.gitlab-ci.yml

image: eddelbuettel/r2u:jammy

pages:
  stage: deploy
  script:
    ## Install pandoc, system dependencies and fonts
    - apt-get update -qq; apt-get install  --no-install-recommends -y pandoc pandoc-citeproc fonts-liberation
    ## R-packages for building infrastructure
    - install.r bookdown knitr pacman rmarkdown rmdformats tinytex targets tarchetypes
    ## Packages for computation
    - install.r
        cubature
        bayesplot
        brms
        extraDistr
        furrr
        GGally
        geodata
        ggh4x
        gifski
        gganimate
        here
        hrbrthemes
        janitor
        kableExtra
        knitr
        mapview
        progressr
        readxl
        rvest
        simecol
        sf
        skimr
        terra
        tidyverse
        tmap
    ## Non-CRAN packages
    ## remotes::install_github(...)  # remember to add remotes as well
    - R -e 'bspm::disable(); install.packages("sit", repos = c("https://cirad-astre.r-universe.dev", "https://cloud.r-project.org"))'
    ## Work around error: "Graphics API version mismatch"
    - R -e 'bspm::disable(); install.packages("ggiraph")'
    ## LaTeX for compilation of PDF versions of reports
    - R -e 'tinytex::install_tinytex()'
    ## Cirad LaTeX class
    - wget https://forgemia.inra.fr/umr-astre/cirad/-/archive/master/cirad-master.zip
    - unzip cirad-master.zip
    - make --directory=cirad-master
    - cp -a cirad-master/tex/latex/cirad ~/.TinyTeX/texmf-local/tex/latex
    - ~/.TinyTeX/bin/x86_64-linux/tlmgr install koma-script collection-latexrecommended multirow
    - ~/.TinyTeX/bin/x86_64-linux/texhash
    ## Font import
    - R -e 'extrafont::font_import(); extrafont::loadfonts()'
    ## Compile documents
    - mkdir -p public reports
    - pandoc -o public/index.html README.md
    - R -e 'targets::tar_make()'
    - mv reports/* public
  artifacts:
    paths:
      - public
      - _targets
  only:
    - main