Merge branch 'toolboxJsonDesc' into 'develop'
[toolbox] Galaxy wrappers and json description See merge request !11
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- .gitignore 1 addition, 1 deletion.gitignore
- .gitlab-ci.yml 77 additions, 26 deletions.gitlab-ci.yml
- Dockerfile 6 additions, 15 deletionsDockerfile
- README.md 8 additions, 30 deletionsREADME.md
- docker_files/met4j.sh 1 addition, 1 deletiondocker_files/met4j.sh
- met4j-core/src/main/java/fr/inrae/toulouse/metexplore/met4j_core/biodata/BioEntity.java 1 addition, 1 deletion...rae/toulouse/metexplore/met4j_core/biodata/BioEntity.java
- met4j-io/src/main/java/fr/inrae/toulouse/metexplore/met4j_io/jsbml/reader/plugin/AnnotationParser.java 217 additions, 226 deletions...xplore/met4j_io/jsbml/reader/plugin/AnnotationParser.java
- met4j-io/src/main/java/fr/inrae/toulouse/metexplore/met4j_io/jsbml/writer/plugin/AnnotationWriter.java 1 addition, 1 deletion...xplore/met4j_io/jsbml/writer/plugin/AnnotationWriter.java
- met4j-io/src/main/java/fr/inrae/toulouse/metexplore/met4j_io/tabulated/attributes/SetEcsFromFile.java 0 additions, 2 deletions...explore/met4j_io/tabulated/attributes/SetEcsFromFile.java
- met4j-io/src/main/java/fr/inrae/toulouse/metexplore/met4j_io/tabulated/attributes/SetRefsFromFile.java 1 addition, 1 deletion...xplore/met4j_io/tabulated/attributes/SetRefsFromFile.java
- met4j-io/src/test/java/fr/inrae/toulouse/metexplore/met4j_io/jsbml/reader/plugin/AnnotationParserTest.java 3 additions, 0 deletions...re/met4j_io/jsbml/reader/plugin/AnnotationParserTest.java
- met4j-toolbox/README.md 116 additions, 3 deletionsmet4j-toolbox/README.md
- met4j-toolbox/pom.xml 6 additions, 0 deletionsmet4j-toolbox/pom.xml
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/GenerateGalaxyFiles.java 226 additions, 0 deletions...oulouse/metexplore/met4j_toolbox/GenerateGalaxyFiles.java
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/GenerateJson.java 117 additions, 0 deletions...inrae/toulouse/metexplore/met4j_toolbox/GenerateJson.java
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/attributes/AbstractSbmlSet.java 19 additions, 8 deletions.../metexplore/met4j_toolbox/attributes/AbstractSbmlSet.java
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/attributes/AbstractSbmlSetAny.java 11 additions, 5 deletions...texplore/met4j_toolbox/attributes/AbstractSbmlSetAny.java
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/attributes/AbstractSbmlSetMetabolite.java 3 additions, 3 deletions...e/met4j_toolbox/attributes/AbstractSbmlSetMetabolite.java
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/attributes/AbstractSbmlSetReaction.java 5 additions, 2 deletions...ore/met4j_toolbox/attributes/AbstractSbmlSetReaction.java
- met4j-toolbox/src/main/java/fr/inrae/toulouse/metexplore/met4j_toolbox/attributes/ExtractPathways.java 8 additions, 0 deletions.../metexplore/met4j_toolbox/attributes/ExtractPathways.java
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